PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17850_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family M-type_MADS
Protein Properties Length: 83aa    MW: 9508.92 Da    PI: 10.5908
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17850_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.23e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKK +ELSvLCdaeva+iifs++gklye+ss
  Neem_17850_f_1  9 KRIENATSRQVTFSKRRNGLLKKGFELSVLCDAEVALIIFSPRGKLYEFSS 59
                    79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.286161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-29264IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-31323IPR002100Transcription factor, MADS-box
CDDcd002658.68E-38360No hitNo description
PfamPF003192.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MTRGKTQMKR IENATSRQVT FSKRRNGLLK KGFELSVLCD AEVALIIFSP RGKLYEFSSS  60
RYSIYNCALD HSSQGFNPVW KNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A8e-18366272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B8e-18366272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C8e-18366272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D8e-18366272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A1e-17366272Myocyte-specific enhancer factor 2A
3kov_B1e-17366272Myocyte-specific enhancer factor 2A
3kov_I1e-17366272Myocyte-specific enhancer factor 2A
3kov_J1e-17366272Myocyte-specific enhancer factor 2A
3mu6_A8e-18360259Myocyte-specific enhancer factor 2A
3mu6_B8e-18360259Myocyte-specific enhancer factor 2A
3mu6_C8e-18360259Myocyte-specific enhancer factor 2A
3mu6_D8e-18360259Myocyte-specific enhancer factor 2A
3p57_A1e-17366272Myocyte-specific enhancer factor 2A
3p57_B1e-17366272Myocyte-specific enhancer factor 2A
3p57_C1e-17366272Myocyte-specific enhancer factor 2A
3p57_D1e-17366272Myocyte-specific enhancer factor 2A
3p57_I1e-17366272Myocyte-specific enhancer factor 2A
3p57_J1e-17366272Myocyte-specific enhancer factor 2A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134936.17e-37hypothetical protein PHAVU_010G088100g
RefseqXP_007134937.17e-37hypothetical protein PHAVU_010G088100g
SwissprotQ388382e-35AGL14_ARATH; Agamous-like MADS-box protein AGL14
TrEMBLV7ARU48e-37V7ARU4_PHAVU; Uncharacterized protein
STRINGPOPTR_0001s08510.12e-35(Populus trichocarpa)
STRINGBra029424.1-P6e-35(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-36AGAMOUS-like 14